hv_anndata.ClusterMap¶

class hv_anndata.ClusterMap(adata=None, **params)¶

Interactive cluster map application for exploring AnnData objects.

Parameter Definitions

adata = ClassSelector(allow_None=True, class_=<class 'anndata.AnnData'>, label='Adata'): AnnData object to visualize
use_raw = Boolean(allow_None=True, label='Use raw'): Whether to use raw data from adata
cmap = Selector(default='viridis', names={}, objects=['viridis', 'magma', 'plasma', 'fire', 'blues', 'RdBu_r', 'coolwarm', 'seismic', 'bwr']): Colormap for expression heatmap
max_genes = Integer(allow_None=True, bounds=(1, 100), default=50, inclusive_bounds=(True, True), label='Max genes'): Maximum number of genes to include in the heatmap
show_widgets = Boolean(default=True, label='Show widgets'): Whether to show control widgets
plot_opts = Dict(class_=<class 'dict'>, default={}, label='Plot opts'): HoloViews plot options for the clustermap plot

Attributes