hv_anndata.create_manifoldmap_plot¶
- hv_anndata.create_manifoldmap_plot(adata, dr_key, x_dim=0, y_dim=1, *, color_by, xaxis_label, yaxis_label, categorical=None, **config)¶
Create a comprehensive manifold map plot with options for datashading and labels.
- Parameters:
- adata
AnnData AnnData object
- dr_key
str Key into the observation annotations in the AnnData object
- x_dim
int, default:0 Index to use for x-axis data
- y_dim
int, default:1 Index to use for y-axis data
- color_by
AdDim Name to give the coloring dimension
- xaxis_label
str Label for the x axis
- yaxis_label
str Label for the y axis
- categorical
bool|None, default:None Whether the data in color_by is categorical
- config
Unpack[ManifoldMapConfig] Additional configuration options.
- adata
- Return type:
- Returns:
HoloViews element with the configured plot