hv_anndata.plotting.scanpy

Basic

scatter(adata, /, kdims[, vdims, color])	Shortcut for a scatter plot.
umap(adata, /[, vdims, color])	Shortcut for a UMAP scatter plot.
heatmap(adata[, base, vdims, transpose, ...])	Shortcut for a heatmap.
tracksplot(adata, /, vdims, *[, kdim, color])	Tracksplot.
violin(adata, /, vdims, *[, kdims, color])
stacked_violin(adata, /, xdim, ydim)	Stacked violin plot.
matrixplot(adata, /, group_by, *[, func, ...])	Heatmap with totals per column.

Preprocessing

highest_expr_genes(adata[, n_top, layer, ...])	Get n_top genes by mean expression.
highly_variable_genes(adata)	Plot dispersions used to identify highly variable genes.
scrublet_score_distribution(adata)	Plot the doublet score distribution.

Tools

draw_graph(adata, kdims[, edge_vdim, ...])	Draw a graph.
ranking(adata, ref, /[, n_points, ...])	Plot (e.g. PCA) score ranking.
embedding_density(adata, basis, *[, ...])	Plot embedding density.