hv_anndata.Dotmap¶

class hv_anndata.Dotmap(**params)¶

Create a DotmapPlot from anndata.

Parameter Definitions

Parameters inherited from:

hv_anndata.plotting.dotmap.DotmapParams: kdims, vdims, marker_genes, expression_cutoff, max_dot_size, standard_scale, use_raw, mean_only_expressed, plot_opts

adata = ClassSelector(allow_None=True, class_=<class 'anndata.AnnData'>, label='Adata')

groupby = String(allow_None=True, default='cell_type', label='Groupby')

dendrogram = ClassSelector(allow_None=True, class_=(<class 'NoneType'>, <class 'bool'>, <class 'holoviews.operation.element.dendrogram'>), label='Dendrogram'): Add a dendrogram.
dendrogram_opts = Dict(allow_None=True, class_=<class 'dict'>, label='Dendrogram opts'): HoloViews plot options for the Dendrogram element.

ls = ClassSelector(allow_None=True, class_=<class 'holoviews.selection.link_selections'>, label='Ls')

_input_dm = ClassSelector(allow_None=True, class_=<class 'holoviews.core.spaces.DynamicMap'>, label=' input dm')

Attributes

`adata`
`dendrogram`
`dendrogram_opts`
`groupby`
`ls`

Methods

plot()

Plot the Dotmap.