hv_anndata.create_clustermap_plot

hv_anndata.create_clustermap_plot(adata, *, use_raw=None, max_genes=None, **config)

Create a hierarchically-clustered heatmap using HoloViews.

Parameters:

adata AnnData

Annotated data matrix

use_raw bool | None, default: None

Whether to use raw attribute of adata. Defaults to True if .raw is present.

max_genes int | None, default: None

Maximum number of genes to include in the heatmap. If None, all genes are included.

config Unpack[ClusterMapConfig]

Additional configuration options, see ClusterMapConfig

Return type:

AdjointLayout

Returns:

Clustered heatmap with dendrograms